charm.git
9 years agoCkIO: Don't try to forward zero-length data
Phil Miller [Sat, 20 Oct 2012 04:32:11 +0000 (23:32 -0500)]
CkIO: Don't try to forward zero-length data

9 years agoCkIO: wrap write stripes around the set of PEs involved
Phil Miller [Sat, 20 Oct 2012 04:31:42 +0000 (23:31 -0500)]
CkIO: wrap write stripes around the set of PEs involved

9 years agoMerge branch 'charm' of charmgit:charm into charm
Esteban Meneses [Fri, 19 Oct 2012 21:04:05 +0000 (21:04 +0000)]
Merge branch 'charm' of charmgit:charm into charm

9 years agoAdding linking support for zlib library on BG/P.
Esteban Meneses [Fri, 19 Oct 2012 21:03:18 +0000 (21:03 +0000)]
Adding linking support for zlib library on BG/P.

9 years agocharmxi: fill in definitions for templated CBase_ types
Aaron Becker [Fri, 19 Oct 2012 20:29:19 +0000 (15:29 -0500)]
charmxi: fill in definitions for templated CBase_ types

normally CBase_ types are typedefs, but for templated types they are
classes that inherit from CBaseT types. Provide definitions for
constructors and pup methods that call the appropriate CBaseT functions,
rather than leaving the CBase_ implementation empty.

9 years agoMerge branch 'charm' of charmgit:charm into charm
Yanhua Sun [Fri, 19 Oct 2012 16:39:15 +0000 (09:39 -0700)]
Merge branch 'charm' of charmgit:charm into charm

9 years agofix openMP performance problem in jacobi-gauss-seidel
Yanhua Sun [Fri, 19 Oct 2012 16:38:39 +0000 (09:38 -0700)]
fix openMP performance problem in jacobi-gauss-seidel

9 years agoMerge branch 'charm' of charmgit:charm into charm
Esteban Meneses [Fri, 19 Oct 2012 15:15:09 +0000 (15:15 +0000)]
Merge branch 'charm' of charmgit:charm into charm

9 years agoFixing a compilation bug on BG/P.
Esteban Meneses [Fri, 19 Oct 2012 15:14:25 +0000 (15:14 +0000)]
Fixing a compilation bug on BG/P.

9 years agoSDAG: case statement: add a new case construct to SDAG
Jonathan Lifflander [Fri, 19 Oct 2012 00:37:25 +0000 (19:37 -0500)]
SDAG: case statement: add a new case construct to SDAG

Semantics: this construct defines an disjunction over a set of 'when' clauses:
only one 'when' out of a set will ever be triggered. All others speculatively
have their trigger set and when one is fulfilled the others are deleted.

Example syntax:
case {
     when a() { }
     when b(), d() { }
     when c() { }
     ...
}

9 years agoAdding support for user specified mapping order on BGQ
Nikhil Jain [Fri, 19 Oct 2012 01:41:20 +0000 (01:41 +0000)]
Adding support for user specified mapping order on BGQ
Usage = to the runjob command, add an environment variable RANK_ORDER.
Consider A - 0, B - 1, C - 2, D - 3, E - 4, T - 5; given a mapping
--mapping=ABCDET, corresponsing RANK_ORDER is --envs RANK_ORDER="0 1 2 3 4 5"
i.e. corresponding dimensios in the order they are mapped.

9 years agoFixing disk checkpoint mechanism.
Esteban Meneses [Thu, 18 Oct 2012 22:06:26 +0000 (17:06 -0500)]
Fixing disk checkpoint mechanism.

9 years agoFixing a compilation but with xlc.
Esteban Meneses [Thu, 18 Oct 2012 21:52:39 +0000 (21:52 +0000)]
Fixing a compilation but with xlc.

9 years agoprint when user calls checkpoint but no syncft build
Xiang Ni [Thu, 18 Oct 2012 06:59:24 +0000 (01:59 -0500)]
print when user calls checkpoint but no syncft build

9 years agofix gnu compilation error on Blue Gene/Q
Abhinav Bhatele [Thu, 18 Oct 2012 01:34:16 +0000 (01:34 +0000)]
fix gnu compilation error on Blue Gene/Q

9 years agoadd more ckloop reduction type
Yanhua Sun [Wed, 17 Oct 2012 22:27:25 +0000 (17:27 -0500)]
add more ckloop reduction type

9 years agoadded miss .h file
Yanhua Sun [Wed, 17 Oct 2012 22:24:41 +0000 (17:24 -0500)]
added miss .h file

9 years agoMerge branch 'charm' of charmgit:charm into charm
Yanhua Sun [Wed, 17 Oct 2012 22:16:19 +0000 (17:16 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agoadd ckloop for Jacobi
Yanhua Sun [Wed, 17 Oct 2012 22:16:12 +0000 (17:16 -0500)]
add ckloop for Jacobi

9 years agoMerge branch 'charm' of charmgit:charm into charm
Gengbin Zheng [Wed, 17 Oct 2012 16:17:41 +0000 (11:17 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agochange the way flush log warnings are printed.
Gengbin Zheng [Wed, 17 Oct 2012 16:16:24 +0000 (11:16 -0500)]
change the way flush log warnings are printed.
The print is delayed to the end, with number of occurrings and PE numbers.

9 years agoDon't allow __int128 when building GPU Manager, as nvcc does not support it.
Lukasz Wesolowski [Tue, 16 Oct 2012 23:54:21 +0000 (18:54 -0500)]
Don't allow __int128 when building GPU Manager, as nvcc does not support it.

9 years agobluegeneq-xlc: disable broken 64-bit __int128 until further notice
Phil Miller [Tue, 16 Oct 2012 22:49:33 +0000 (17:49 -0500)]
bluegeneq-xlc: disable broken 64-bit __int128 until further notice

Per Jeff Hammond's message to the Vesta/Mira early users' discussion list
(below), the XL compilers don't properly generate a 128-bit type for
__int128. Pass the flag disabling this so that runtime and client code doesn't
accidentally stumble on it. This should be reverted once the compilers are
fixed.

> From: Jeff Hammond <jhammond@alcf.anl.gov>
> Date: Tue, 16 Oct 2012 17:37:26 -0500
> Message-ID: <CAGKz=u+syCU_wURrWxj6TEF-e9QK0nHHp6mORW5Z=M1JaEwPzg@mail.gmail.com>
> To: early-users-discuss <early-users-discuss@alcf.anl.gov>
> Subject: [Early-users-discuss] some known issues and their workarounds
> List-Archive: <https://lists.alcf.anl.gov/mailman/private/early-users-discuss>

> Here are some issues that we know about that are not going to be fixed
> immediately because they are either noncritical or require substantial
> effort to fix and will take some time to be resolved.  I am sending
> this for your convenience, particularly if you might get bitten by a
> silent error on them.

> 1) IBM XLC++ does not implement __int128 properly.  It is a 64b type
> rather than a 128b one.  If you have an automated build system that
> tests for this, please use "-qnokeyword=__int128".  I completely
> understand that one can say "but the whole point of an automated
> buildsystem is to not have to know the answers in advance."  To this,
> I respond, "With great computing power, comes great compiler
> responsibility." :-)

9 years agopami: point charm at zlib location
Ramprasad Venkataraman [Tue, 16 Oct 2012 20:48:27 +0000 (20:48 +0000)]
pami: point charm at zlib location

9 years agoFixing an error with parallel recovery.
Esteban Meneses [Tue, 16 Oct 2012 21:25:54 +0000 (16:25 -0500)]
Fixing an error with parallel recovery.

9 years agoRemoving old style group creation from manual
Nikhil Jain [Tue, 16 Oct 2012 05:53:13 +0000 (00:53 -0500)]
Removing old style group creation from manual

9 years agoadded ckLoop for Jacobi-Seidel
Yanhua Sun [Tue, 16 Oct 2012 05:27:40 +0000 (00:27 -0500)]
added ckLoop for Jacobi-Seidel

9 years agocorrect name
Yanhua Sun [Tue, 16 Oct 2012 04:02:03 +0000 (23:02 -0500)]
correct name

9 years agofix the bug incurred by previous commit
Xiang Ni [Tue, 16 Oct 2012 03:17:36 +0000 (22:17 -0500)]
fix the bug incurred by previous commit

9 years agoSwitch to xl.legacy.ndebug for best performance.
Sameer Kumar [Mon, 15 Oct 2012 11:12:11 +0000 (06:12 -0500)]
Switch to xl.legacy.ndebug for best performance.

9 years agompi-bluegeneq-smp changes.
Sameer Kumar [Mon, 15 Oct 2012 10:53:02 +0000 (05:53 -0500)]
mpi-bluegeneq-smp changes.

9 years agoEnable MPI_SMP.
Sameer Kumar [Mon, 15 Oct 2012 06:58:50 +0000 (01:58 -0500)]
Enable MPI_SMP.

9 years agoset inRestarting flag
Xiang Ni [Mon, 15 Oct 2012 08:31:48 +0000 (03:31 -0500)]
set inRestarting flag

9 years agouse barrier during restart
Xiang Ni [Mon, 15 Oct 2012 01:06:06 +0000 (20:06 -0500)]
use barrier during restart

9 years agoMinor fix
Nikhil Jain [Sat, 13 Oct 2012 07:32:15 +0000 (02:32 -0500)]
Minor fix

9 years agocharmxi: Register the debug PUP for templated messages correctly, now that they are...
Phil Miller [Sat, 13 Oct 2012 06:28:41 +0000 (01:28 -0500)]
charmxi: Register the debug PUP for templated messages correctly, now that they are registered at all

9 years agoDefine the debug PUP function that's assumed to exist for all messages on CkQdMsg
Phil Miller [Sat, 13 Oct 2012 05:37:24 +0000 (00:37 -0500)]
Define the debug PUP function that's assumed to exist for all messages on CkQdMsg

9 years agoMerge branch 'charm' of charmgit:charm into charm
Yanhua Sun [Sat, 13 Oct 2012 04:45:14 +0000 (23:45 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agominor
Yanhua Sun [Sat, 13 Oct 2012 04:44:58 +0000 (23:44 -0500)]
minor

9 years agominor
yanhua [Sat, 13 Oct 2012 04:43:57 +0000 (23:43 -0500)]
minor

9 years agoMerge branch 'charm' of charmgit:charm into charm
yanhua [Sat, 13 Oct 2012 04:40:00 +0000 (23:40 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agofix for readonly variables
yanhua [Sat, 13 Oct 2012 04:39:51 +0000 (23:39 -0500)]
fix for readonly variables

9 years agoFixing some issues with mpi-interoperate
Nikhil Jain [Sat, 13 Oct 2012 04:21:01 +0000 (23:21 -0500)]
Fixing some issues with mpi-interoperate

9 years agodoc: update section heading
Ramprasad Venkataraman [Fri, 12 Oct 2012 22:32:29 +0000 (17:32 -0500)]
doc: update section heading

9 years agodoc: add note to anyone who edits list of reserved words
Ramprasad Venkataraman [Fri, 12 Oct 2012 21:58:09 +0000 (16:58 -0500)]
doc: add note to anyone who edits list of reserved words

9 years agodoc: remove useless arabic spans from html
Ramprasad Venkataraman [Fri, 12 Oct 2012 21:00:56 +0000 (16:00 -0500)]
doc: remove useless arabic spans from html

9 years agodoc: newcommand \uw is now a no-op
Ramprasad Venkataraman [Fri, 12 Oct 2012 20:13:20 +0000 (15:13 -0500)]
doc: newcommand \uw is now a no-op

9 years agodoc: remove span tags from within pre sections
Ramprasad Venkataraman [Fri, 12 Oct 2012 20:07:00 +0000 (15:07 -0500)]
doc: remove span tags from within pre sections

9 years agodoc: css. increase width of pre sections
Ramprasad Venkataraman [Fri, 12 Oct 2012 20:06:09 +0000 (15:06 -0500)]
doc: css. increase width of pre sections

9 years agoDocs: add keyword list to manual
Phil Miller [Fri, 12 Oct 2012 19:37:50 +0000 (14:37 -0500)]
Docs: add keyword list to manual

9 years agocharmxi: Move meaning from comments to function names
Phil Miller [Fri, 12 Oct 2012 19:20:05 +0000 (14:20 -0500)]
charmxi: Move meaning from comments to function names

9 years agomove to common gemini arch directory
Gengbin Zheng [Thu, 11 Oct 2012 21:01:24 +0000 (16:01 -0500)]
move to common gemini arch directory

9 years agoSDAG: move __sdag_pup generated code from decl.h to def.h
Phil Miller [Wed, 10 Oct 2012 21:56:25 +0000 (16:56 -0500)]
SDAG: move __sdag_pup generated code from decl.h to def.h

9 years agoSDAG: intialize cDep structure after migration
Phil Miller [Wed, 10 Oct 2012 21:38:56 +0000 (16:38 -0500)]
SDAG: intialize cDep structure after migration

9 years agouse the simple barrier instead of reduction.
Gengbin Zheng [Wed, 10 Oct 2012 21:41:20 +0000 (16:41 -0500)]
use the simple barrier instead of reduction.

9 years agobased on Xiang Ni's simple barrier in branch ft_barrier, this is a simplified barrier...
Gengbin Zheng [Wed, 10 Oct 2012 21:39:29 +0000 (16:39 -0500)]
based on Xiang Ni's simple barrier in branch ft_barrier, this is a simplified barrier implementation and can be used during FT checkpointing/restart.
No states needs to be saved in pup.

9 years agominor change
Gengbin Zheng [Wed, 10 Oct 2012 20:30:32 +0000 (15:30 -0500)]
minor change

9 years agoMerge branch 'charm' of charmgit:charm into charm
YanhuaSun [Wed, 10 Oct 2012 16:04:09 +0000 (11:04 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agomodification of jacobi-gauss-seidal
YanhuaSun [Wed, 10 Oct 2012 16:01:55 +0000 (11:01 -0500)]
modification of jacobi-gauss-seidal

9 years agoAdd RefineSwapLB description to the manual
Harshitha [Wed, 10 Oct 2012 05:03:00 +0000 (00:03 -0500)]
Add RefineSwapLB description to the manual

9 years agoSDAG: ensure that necessary data structure is initialized
Phil Miller [Wed, 10 Oct 2012 00:31:08 +0000 (19:31 -0500)]
SDAG: ensure that necessary data structure is initialized

The __cDep structure that SDAG depends on to track the dependencies and state
was not being initialized in some edge cases. Fix them by having every declared
SDAG entry method (either top-level or when-defined) check and initialize this
if it's missing.

In the case of a chare class constructor calling some SDAG method on itself
from the constructor, the surrounding generated method's call to
impl_obj->_sdag_init() won't have happened yet. In the case of inheritance from
a class with SDAG code, the generated code that would have called _sdag_init()
was never running. Incidentally, this may enable SDAG to function for classes
with SDAG content at multiple levels of their inheritance hierarchy.

The change to auto_ptr is necessary because the bare pointer was being
value-initialized in some cases, and could thus be non-NULL junk that would
pass the test.

9 years agogemini_gni-crayxe-hugepages: check that a hugepages module is actually loaded, and... hugepages
Phil Miller [Tue, 9 Oct 2012 21:38:56 +0000 (16:38 -0500)]
gemini_gni-crayxe-hugepages: check that a hugepages module is actually loaded, and error otherwise

9 years agogemini_gni-crayxe: add a hugepages option, to automate the build a bit more
Phil Miller [Tue, 9 Oct 2012 21:17:51 +0000 (16:17 -0500)]
gemini_gni-crayxe: add a hugepages option, to automate the build a bit more

9 years agopup machineInfo byte by byte instead of by size, to support backward compatibility...
Gengbin Zheng [Tue, 9 Oct 2012 17:12:12 +0000 (12:12 -0500)]
pup machineInfo byte by byte instead of by size, to support backward compatibility. Increased machineInfo version by 1 due to the increase in int types (int128).

9 years agoupdated
Gengbin Zheng [Tue, 9 Oct 2012 16:01:38 +0000 (11:01 -0500)]
updated

9 years agocheck if int128 is 16 bytes
Gengbin Zheng [Tue, 9 Oct 2012 16:00:17 +0000 (11:00 -0500)]
check if int128 is 16 bytes

9 years agoMerge branch 'charm' of charmgit:charm into charm
Esteban Meneses [Tue, 9 Oct 2012 14:24:31 +0000 (09:24 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agoAdding support for reduction messages in the collective-based message logging protocol.
Esteban Meneses [Tue, 9 Oct 2012 14:23:51 +0000 (09:23 -0500)]
Adding support for reduction messages in the collective-based message logging protocol.

9 years agoMerge branch 'pami-bgq-commthr-ready' of charmgit:charm into charm
Nikhil Jain [Tue, 9 Oct 2012 07:39:27 +0000 (02:39 -0500)]
Merge branch 'pami-bgq-commthr-ready' of charmgit:charm into charm

9 years agoadd Jacobi3d and gauss-siedal combination
yanhua [Tue, 9 Oct 2012 05:11:19 +0000 (00:11 -0500)]
add Jacobi3d and gauss-siedal combination

9 years agoMerge branch 'pami-bgq-commthr-ready' of charmgit:charm into pami-bgq-commthr-ready pami-bgq-commthr-ready
yanhua [Tue, 9 Oct 2012 05:09:26 +0000 (00:09 -0500)]
Merge branch 'pami-bgq-commthr-ready' of charmgit:charm into pami-bgq-commthr-ready

9 years agoCombination of Jacobi and gauss-siedal
yanhua [Tue, 9 Oct 2012 05:09:18 +0000 (00:09 -0500)]
Combination of Jacobi and gauss-siedal

9 years agochange #ifdef CMK___int128_DEFINED to #if
Gengbin Zheng [Mon, 8 Oct 2012 15:15:24 +0000 (10:15 -0500)]
change #ifdef CMK___int128_DEFINED to #if

9 years agoMerge branch 'charm' of charmgit:charm into charm
Esteban Meneses [Mon, 8 Oct 2012 14:44:11 +0000 (09:44 -0500)]
Merge branch 'charm' of charmgit:charm into charm

9 years agoRemoving forwarding of messages for a NULL object at the message logging layer.
Esteban Meneses [Mon, 8 Oct 2012 14:43:49 +0000 (09:43 -0500)]
Removing forwarding of messages for a NULL object at the message logging layer.

9 years agopup for __int128
Gengbin Zheng [Mon, 8 Oct 2012 05:52:22 +0000 (00:52 -0500)]
pup for __int128

9 years agoadd LBTurnCommOn and Off to turn Comm statistics collection on and off at runtime.
Gengbin Zheng [Mon, 8 Oct 2012 05:48:20 +0000 (00:48 -0500)]
add LBTurnCommOn and Off to turn Comm statistics collection on and off at runtime.

9 years agoupdated
Gengbin Zheng [Mon, 8 Oct 2012 05:34:57 +0000 (00:34 -0500)]
updated

9 years agotest __int128
Gengbin Zheng [Mon, 8 Oct 2012 05:33:02 +0000 (00:33 -0500)]
test __int128

9 years agowarning when projections flushing logs.
Gengbin Zheng [Mon, 8 Oct 2012 05:32:34 +0000 (00:32 -0500)]
warning when projections flushing logs.

9 years agoMerge branch 'charm' of charmgit:charm into pami-bgq-commthr-ready
Nikhil Jain [Mon, 8 Oct 2012 05:20:08 +0000 (00:20 -0500)]
Merge branch 'charm' of charmgit:charm into pami-bgq-commthr-ready

9 years agocharmxi: fix syntax error for bigsim support after TList->std::list refactoring
Phil Miller [Sun, 7 Oct 2012 16:12:32 +0000 (11:12 -0500)]
charmxi: fix syntax error for bigsim support after TList->std::list refactoring

9 years agoVariable name change to avoid conflicts
Nikhil Jain [Sat, 6 Oct 2012 03:11:28 +0000 (23:11 -0400)]
Variable name change to avoid conflicts

9 years agoAdding initial support for optimized message-logging protocol for collectives.
Esteban Meneses [Fri, 5 Oct 2012 21:36:59 +0000 (16:36 -0500)]
Adding initial support for optimized message-logging protocol for collectives.

9 years agocharmxi: Don't use std::bind2nd with a reference argument, because older g++ (4.1...
Phil Miller [Fri, 5 Oct 2012 19:33:58 +0000 (19:33 +0000)]
charmxi: Don't use std::bind2nd with a reference argument, because older g++ (4.1.2 on BG/P) chokes on it

9 years agoMerge of pami-bgq-commthr.
Sameer Kumar [Fri, 5 Oct 2012 18:34:20 +0000 (13:34 -0500)]
Merge of pami-bgq-commthr.

9 years agocharmxi: Delete archaic TList class
Phil Miller [Fri, 5 Oct 2012 03:09:41 +0000 (22:09 -0500)]
charmxi: Delete archaic TList class

9 years agocharmxi: convert connectEntries from TList to std::list
Phil Miller [Fri, 5 Oct 2012 03:07:26 +0000 (22:07 -0500)]
charmxi: convert connectEntries from TList to std::list

9 years agocharmxi: convert macros from TList to std::list
Phil Miller [Fri, 5 Oct 2012 02:48:11 +0000 (21:48 -0500)]
charmxi: convert macros from TList to std::list

9 years agocharmxi: convert Entry::stateVars from TList to std::list
Phil Miller [Fri, 5 Oct 2012 02:43:44 +0000 (21:43 -0500)]
charmxi: convert Entry::stateVars from TList to std::list

9 years agocharmxi: convert SdagConstruct::publishesList from TList to std::list
Phil Miller [Fri, 5 Oct 2012 01:51:20 +0000 (20:51 -0500)]
charmxi: convert SdagConstruct::publishesList from TList to std::list

9 years agocharmxi: convert SdagConstruct::constructs from TList to std::list
Phil Miller [Fri, 5 Oct 2012 01:44:10 +0000 (20:44 -0500)]
charmxi: convert SdagConstruct::constructs from TList to std::list

9 years agocharmxi: replace TList of propagated state variables with std::list
Phil Miller [Thu, 4 Oct 2012 22:31:06 +0000 (17:31 -0500)]
charmxi: replace TList of propagated state variables with std::list

9 years agocharmxi: Split SDAG's When into a separate class from SdagConstruct
Phil Miller [Thu, 4 Oct 2012 21:15:26 +0000 (16:15 -0500)]
charmxi: Split SDAG's When into a separate class from SdagConstruct

9 years agocharmxi: plug memory leak
Phil Miller [Thu, 4 Oct 2012 20:49:15 +0000 (15:49 -0500)]
charmxi: plug memory leak

9 years agocharmxi: privatize the lists that make up SdagConstruct
Phil Miller [Thu, 4 Oct 2012 18:08:56 +0000 (13:08 -0500)]
charmxi: privatize the lists that make up SdagConstruct

9 years agocharmxi: convert generateCall arguments from charstar to bare XStr
Phil Miller [Thu, 4 Oct 2012 17:58:57 +0000 (12:58 -0500)]
charmxi: convert generateCall arguments from charstar to bare XStr

9 years agocharmxi: remove a whole bunch of extraneous explicit charstar() conversions
Phil Miller [Thu, 4 Oct 2012 17:45:12 +0000 (12:45 -0500)]
charmxi: remove a whole bunch of extraneous explicit charstar() conversions

9 years agocharmxi sdag: privatize stateVarsChildren
Phil Miller [Thu, 4 Oct 2012 17:36:09 +0000 (12:36 -0500)]
charmxi sdag: privatize stateVarsChildren

9 years agocharmxi sdag: privatize estateVars and convert from TList
Phil Miller [Thu, 4 Oct 2012 17:05:38 +0000 (12:05 -0500)]
charmxi sdag: privatize estateVars and convert from TList