James Phillips
Collaborators
at illinois.edu
Profile
Research Areas
Papers
20-03
2020
[Paper]
[Paper]
Scalable molecular dynamics on CPU and GPU architectures with NAMD [J. Chem. Phys. 2020]
17-12
2017
[Paper]
[Paper]
NAMD: Scalable Molecular Dynamics Based on the Charm++ Parallel Runtime System [Book Chapter 2017]
14-17
2014
[Paper]
[Paper]
Mapping to Irregular Torus Topologies and Other Techniques for Petascale Biomolecular Simulation [SC 2014]
13-43
2013
[Paper]
[Paper]
Parallel Science and Engineering Applications: The Charm++ Approach: Chapter 4: Scalable Molecular Dynamics with NAMD [Book 2013]
12-33
2012
[Paper]
[Paper]
Optimizing Fine-grained Communication in a Biomolecular Simulation Application on Cray XK6 [SC 2012]
11-17
2011
[Paper]
[Paper]
Enabling and Scaling Biomolecular Simulations of 100~Million Atoms on Petascale Machines with a Multicore-Optimized Message-Driven Runtime [SC 2011]
10-25
2011
[Paper]
[Paper]
NAnoscale Molecular Dynamics (NAMD) [Encyclopedia of Parallel Computing 2011]
08-01
2008
[Paper]
[Paper]
Overcoming Scaling Challenges in Biomolecular Simulations across Multiple Platforms [IPDPS 2008]
07-10
2007
[Paper]
[Paper]
NAMD: A Portable and Highly Scalable Program for Biomolecular Simulations [CS Res. & Tech. Report 2007]
07-05
2008
[Paper]
[Paper]
Biomolecular Modeling in the Era of Petascale Computing [Petascale Computing: Algorithms and Applications 2008]
07-02
2007
[Paper]
[Paper]
Scalable Molecular Dynamics with NAMD on Blue Gene/L [IBM Journal of Research and Development 2007]
05-24
2005
[Paper]
[Paper]
Biomolecular Modeling using Parallel Supercomputers [Handbook of Computational Molecular Biology 2005]
05-23
2005
[Paper]
[Paper]
Scalable Molecular Dynamics with NAMD [Journal of Computational Chemistry 2005]
02-07
2002
[Paper]
[Paper]
NAMD: Biomolecular Simulation on Thousands of Processors [SC 2002]
02-04
2002
[Paper]
[Paper]
NAMD: Biomolecular Simulation on Thousands of Processors [Scaling to New Heights Workshop at Pittsburgh Supercomputing Center 2002]
00-06
2000
[Paper]
[Paper]
Scalable Molecular Dynamics for Large Biomolecular Systems [SC 2000]
99-07
1999
[Paper]
[Paper]
BioCoRE: A Collaboratory for Structural Biology [SCS International Conference on Web-Based Modeling and Simulation 1999]
99-01
2000
[Paper]
[Paper]
Application Performance of a Linux Cluster using Converse [RTSPP 2000]
98-05
1998
[Paper]
[Paper]
Avoiding Algorithmic Obfuscation in a Message-Driven Parallel MD Code [LNCS 1998]
98-04
1998
[Paper]
[Paper]
Flexibility and Interoperability in a Parallel Molecular Dynamics Code [Object Oriented Methods for Inter-operable Scientific and Engineering Computing 1998]
98-03
1998
[Paper]
[Paper]
NAMD2: Greater Scalability for Parallel Molecular Dynamics [Journal of Computational Physics 1998]
Talks/Posters